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Species belonging to selected taxon:

Drosophila melanogaster



ABOUT THIS RECORD

ID: MNEST036484
species: Drosophila melanogaster
source: miRBase, original name: dme-mir-954 (MI0005806)

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCACATGCAACATCCCTTAC

miRNA*
TCTGGGTGTTGCGTTGTGTG

mismatches: 6
bulges: 1

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pre-miRNA
TACAAACACAAGATTTTCTGGGTGTTGCGTTGTGTGTACCTGTGTACAGGCGTATTCACATGCAACATCCCTTACATCTTGCTTGAT

dot-bracket secondary structure
..(((...((((((.....(((((((((((((.(((..((((....))))..))).)).))))))))))).....)))))).)))..


SIMILARITIES
miRBase dme-mir-954: 3e-44

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC, Genome Res. 17:1850-1864(2007)., "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"




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